Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| triphosphoribosyl-dephospho-coa synthase | E5284_RS01720 | Not Available | Positive | 362566 - 363423 | 29975.9 |
| malonate decarboxylase acyl carrier protein | E5284_RS01725 | Not Available | Positive | 363433 - 363732 | 10620.6 |
| biotin-independent malonate decarboxylase subunit beta | E5284_RS01730 | Not Available | Positive | 363725 - 364558 | 29577.2 |
| biotin-independent malonate decarboxylase subunit gamma | E5284_RS01735 | Not Available | Positive | 364558 - 365358 | 28270.7 |
| aec family transporter | E5284_RS01740 | Not Available | Positive | 365481 - 366440 | 33393.7 |
| malonate decarboxylase holo-acp synthase | E5284_RS01745 | Not Available | Positive | 366444 - 367061 | 22885.2 |
| malonate decarboxylase subunit epsilon | E5284_RS01750 | Not Available | Positive | 367062 - 367958 | 31808.4 |
| lysr family transcriptional regulator | E5284_RS01755 | Not Available | Negative | 368042 - 368974 | 34675.3 |
| abc transporter atp-binding protein | E5284_RS01760 | Not Available | Negative | 368991 - 370895 | 71476.1 |
| glutathione-regulated potassium-efflux system ancillary protein kefg | E5284_RS01765 | Not Available | Positive | 371027 - 371578 | 21040.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

