Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yccs/yhfk family putative transporter | E5284_RS01670 | Not Available | Negative | 351640 - 353727 | 79211.4 |
| camp-activated global transcriptional regulator crp | E5284_RS01675 | Not Available | Negative | 353779 - 354411 | 23657.9 |
| osmc family protein | E5284_RS01680 | Not Available | Positive | 354721 - 355125 | 14522.5 |
| phosphoribulokinase | E5284_RS01685 | Not Available | Negative | 355198 - 356067 | 32375.8 |
| yheu family protein | E5284_RS01690 | Not Available | Negative | 356120 - 356338 | 8479.98 |
| hydrolase | E5284_RS01695 | Not Available | Negative | 356341 - 357357 | 38454.4 |
| nudix hydrolase | E5284_RS01700 | Not Available | Negative | 357439 - 358158 | 27160.3 |
| ribose-phosphate diphosphokinase | E5284_RS01705 | Not Available | Positive | 358351 - 359211 | 31033.4 |
| nicotinate phosphoribosyltransferase | E5284_RS01710 | Not Available | Positive | 359226 - 360716 | 56659.3 |
| malonate decarboxylase subunit alpha | E5284_RS01715 | Not Available | Positive | 360911 - 362566 | 60657.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

