Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| siroheme synthase cysg | E5284_RS01620 | Not Available | Negative | 341255 - 342628 | 50058.5 |
| nitrite transporter nirc | E5284_RS01625 | Not Available | Negative | 342640 - 343449 | 28655.2 |
| nitrite reductase small subunit nird | E5284_RS01630 | Not Available | Negative | 343623 - 343949 | 12161.6 |
| nadph-nitrite reductase large subunit | E5284_RS01635 | Not Available | Negative | 343946 - 346489 | 93234.8 |
| mfs transporter tsga | E5284_RS01640 | Not Available | Negative | 346761 - 347942 | 43319.3 |
| peptidylprolyl isomerase a | E5284_RS01645 | Not Available | Positive | 348207 - 348779 | 20289.3 |
| yhfg family protein | E5284_RS01650 | Not Available | Positive | 348887 - 349054 | 6570.89 |
| putative adenosine monophosphate-protein transferase fic | E5284_RS01655 | Not Available | Positive | 349044 - 349646 | 22698.1 |
| aminodeoxychorismate synthase component 2 | E5284_RS01660 | Not Available | Positive | 349678 - 350241 | 20655.8 |
| aspartate aminotransferase family protein | E5284_RS01665 | Not Available | Positive | 350327 - 351544 | 43793.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

