Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hofp dna utilization family protein | E5284_RS01570 | Not Available | Positive | 332307 - 332717 | 15043.8 |
| dna uptake porin hofq | E5284_RS01575 | Not Available | Positive | 332629 - 333867 | 44825.2 |
| shikimate kinase arok | E5284_RS01580 | Not Available | Positive | 334271 - 334792 | 19489.1 |
| 3-dehydroquinate synthase | E5284_RS01585 | Not Available | Positive | 334848 - 335936 | 38931.4 |
| cell division protein damx | E5284_RS01590 | Not Available | Positive | 336033 - 337343 | 46638.8 |
| adenine-specific dna-methyltransferase | E5284_RS01595 | Not Available | Positive | 337461 - 338297 | 32107.1 |
| ribulose-phosphate 3-epimerase | E5284_RS01600 | Not Available | Positive | 338315 - 338992 | 24578.8 |
| phosphoglycolate phosphatase | E5284_RS01605 | Not Available | Positive | 338985 - 339743 | 27236.7 |
| tryptophan--trna ligase | E5284_RS01610 | Not Available | Positive | 339736 - 340740 | 37413.9 |
| duf4223 family protein | E5284_RS01615 | Not Available | Negative | 340847 - 341014 | 5777.12 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

