Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| [fe-s]-dependent transcriptional repressor feoc | E5284_RS01470 | Not Available | Negative | 309654 - 309890 | 8710.68 |
| fe(2+) transporter permease subunit feob | E5284_RS01475 | Not Available | Negative | 309901 - 312219 | 84084.1 |
| ferrous iron transporter a | E5284_RS01480 | Not Available | Negative | 312238 - 312465 | 8341.28 |
| tex family protein | E5284_RS01485 | Not Available | Negative | 312896 - 315232 | 85418.0 |
| transcription elongation factor greb | E5284_RS01490 | Not Available | Negative | 315329 - 315802 | 18526.0 |
| two-component system response regulator ompr | E5284_RS01495 | Not Available | Positive | 316029 - 316748 | 27355.3 |
| two-component system sensor histidine kinase envz | E5284_RS01500 | Not Available | Positive | 316745 - 318097 | 50325.1 |
| nads family protein | E5284_RS01505 | Not Available | Negative | 318153 - 318449 | 11158.6 |
| type ii toxin-antitoxin system rele/pare family toxin | E5284_RS01510 | Not Available | Negative | 318502 - 318819 | 12226.9 |
| phosphoenolpyruvate carboxykinase (atp) | E5284_RS01515 | Not Available | Negative | 318943 - 320565 | 59800.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

