Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nacht domain-containing protein | E5284_RS08265 | Not Available | Negative | 1766322 - 1770296 | 152436.0 |
| Portal protein | E5284_RS08270 | Not Available | Negative | 1770701 - 1771717 | 38359.8 |
| Terminase | E5284_RS08275 | Not Available | Negative | 1771719 - 1773488 | 66775.1 |
| Capsid-scaffolding protein | E5284_RS08280 | Not Available | Positive | 1773655 - 1774509 | 31299.7 |
| Capsid protein | E5284_RS08285 | Not Available | Positive | 1774571 - 1775638 | 39861.2 |
| R protein | E5284_RS08290 | Not Available | Positive | 1775642 - 1776397 | 27685.0 |
| Phage head protein | E5284_RS08295 | Not Available | Positive | 1776497 - 1777003 | 18891.8 |
| Phage tail protein | E5284_RS08300 | Not Available | Positive | 1777003 - 1777206 | 7271.68 |
| Holin | E5284_RS08305 | Not Available | Positive | 1777197 - 1777418 | 8259.07 |
| Prophage lysozyme | E5284_RS08310 | Not Available | Positive | 1777402 - 1777911 | 18513.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

