Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS01255 | Not Available | Positive | 262791 - 263072 | 10981.8 |
| hypothetical protein | E5284_RS01260 | Not Available | Positive | 263093 - 263362 | 9670.99 |
| sn-glycerol-3-phosphate abc transporter substrate-binding protein ugpb | E5284_RS01265 | Not Available | Positive | 263606 - 264922 | 48347.1 |
| sn-glycerol-3-phosphate abc transporter permease ugpa | E5284_RS01270 | Not Available | Positive | 265027 - 265914 | 33120.6 |
| sn-glycerol-3-phosphate abc transporter permease ugpe | E5284_RS01275 | Not Available | Positive | 265911 - 266756 | 31621.9 |
| sn-glycerol-3-phosphate import atp-binding protein ugpc | E5284_RS01280 | Not Available | Positive | 266758 - 267828 | 39722.5 |
| glycerophosphodiester phosphodiesterase | E5284_RS01285 | Not Available | Positive | 267825 - 268568 | 27472.7 |
| duf2756 family protein | E5284_RS01290 | Not Available | Negative | 268565 - 269008 | 16726.2 |
| gamma-glutamyltransferase | E5284_RS01295 | Not Available | Positive | 269127 - 270869 | 61698.6 |
| marr family transcriptional regulator | E5284_RS01300 | Not Available | Negative | 270932 - 271192 | 9936.85 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

