Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division atp-binding protein ftse | E5284_RS01205 | Not Available | Positive | 252687 - 253355 | 24295.6 |
| permease-like cell division protein ftsx | E5284_RS01210 | Not Available | Positive | 253348 - 254406 | 38574.9 |
| rna polymerase sigma factor rpoh | E5284_RS01215 | Not Available | Positive | 254661 - 255515 | 32541.7 |
| branched-chain amino acid abc transporter substrate-binding protein | E5284_RS01220 | Not Available | Positive | 255838 - 256941 | 39070.6 |
| aspartate 1-decarboxylase autocleavage activator panm | E5284_RS01225 | Not Available | Negative | 257028 - 257411 | 14411.2 |
| high-affinity branched-chain amino acid abc transporter substrate-binding protein livk | E5284_RS01230 | Not Available | Positive | 257836 - 258945 | 39477.1 |
| high-affinity branched-chain amino acid abc transporter permease livh | E5284_RS01235 | Not Available | Positive | 258993 - 259919 | 32911.2 |
| branched chain amino acid abc transporter permease livm | E5284_RS01240 | Not Available | Positive | 259916 - 261196 | 46496.3 |
| high-affinity branched-chain amino acid abc transporter atp-binding protein livg | E5284_RS01245 | Not Available | Positive | 261193 - 261960 | 28423.7 |
| high-affinity branched-chain amino acid abc transporter atp-binding protein livf | E5284_RS01250 | Not Available | Positive | 261978 - 262691 | 26377.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

