Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfurtransferase tusa | E5284_RS01155 | Not Available | Positive | 244099 - 244344 | 9100.01 |
| zn(ii)/cd(ii)/pb(ii) translocating p-type atpase znta | E5284_RS01160 | Not Available | Negative | 244446 - 246656 | 77306.1 |
| lysoplasmalogenase | E5284_RS01165 | Not Available | Negative | 246732 - 247358 | 23669.9 |
| duf2500 domain-containing protein | E5284_RS01170 | Not Available | Positive | 247500 - 247859 | 13423.2 |
| hcp family type vi secretion system effector | E5284_RS01175 | Not Available | Positive | 248097 - 248576 | 17665.0 |
| hypothetical protein | E5284_RS01180 | Not Available | Positive | 248586 - 249464 | 32923.9 |
| duf1240 domain-containing protein | E5284_RS01185 | Not Available | Positive | 249448 - 249975 | 19975.6 |
| duf1145 family protein | E5284_RS01190 | Not Available | Negative | 250028 - 250303 | 10512.7 |
| 16s rrna (guanine(966)-n(2))-methyltransferase | E5284_RS01195 | Not Available | Negative | 250293 - 250889 | 21921.2 |
| signal recognition particle-docking protein ftsy | E5284_RS01200 | Not Available | Positive | 251164 - 252684 | 55699.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

