Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenine permease adep | E5284_RS23040 | Not Available | Positive | 4829832 - 4831169 | 46747.6 |
| nadph-dependent fmn reductase | E5284_RS23045 | Not Available | Negative | 4831224 - 4831790 | 20229.5 |
| 4'-phosphopantetheinyl transferase family protein | E5284_RS23050 | Not Available | Negative | 4831821 - 4832570 | 27658.1 |
| hth-type transcriptional regulator yidz | E5284_RS23055 | Not Available | Negative | 4832737 - 4833696 | 36930.9 |
| mfs transporter | E5284_RS23060 | Not Available | Negative | 4833665 - 4834846 | 41706.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | E5284_RS23065 | Not Available | Negative | 4835027 - 4836391 | 49079.6 |
| membrane protein insertase yidc | E5284_RS23070 | Not Available | Negative | 4836500 - 4838146 | 61553.3 |
| membrane protein insertion efficiency factor yidd | E5284_RS23075 | Not Available | Negative | 4838149 - 4838406 | 9371.57 |
| ribonuclease p protein component | E5284_RS23080 | Not Available | Negative | 4838370 - 4838729 | 13800.0 |
| 50s ribosomal protein l34 | E5284_RS23085 | Not Available | Negative | 4838747 - 4838887 | 5409.74 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

