Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase glmu | E5284_RS22985 | Not Available | Positive | 4817636 - 4819006 | 49286.1 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | E5284_RS22990 | Not Available | Positive | 4819246 - 4821075 | 66954.5 |
| gyri-like domain-containing protein | E5284_RS22995 | Not Available | Positive | 4821181 - 4822068 | 33537.9 |
| amidohydrolase | E5284_RS23000 | Not Available | Positive | 4822137 - 4823888 | 62512.9 |
| phosphate abc transporter substrate-binding protein psts | E5284_RS23005 | Not Available | Positive | 4824223 - 4825263 | 36917.6 |
| phosphate abc transporter permease pstc | E5284_RS23010 | Not Available | Positive | 4825408 - 4826367 | 34230.1 |
| phosphate abc transporter permease psta | E5284_RS23015 | Not Available | Positive | 4826367 - 4827257 | 32208.6 |
| phosphate abc transporter atp-binding protein pstb | E5284_RS23025 | Not Available | Positive | 4827365 - 4828138 | 29000.9 |
| phosphate signaling complex protein phou | E5284_RS23030 | Not Available | Positive | 4828153 - 4828878 | 27464.3 |
| 6-phosphogluconate phosphatase | E5284_RS23035 | Not Available | Negative | 4828999 - 4829664 | 24503.4 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

