Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | E5284_RS22935 | Not Available | Positive | 4808857 - 4809480 | 23294.2 |
| f0f1 atp synthase subunit i | E5284_RS22940 | Not Available | Positive | 4810096 - 4810476 | 13728.7 |
| f0f1 atp synthase subunit a | E5284_RS22945 | Not Available | Positive | 4810484 - 4811299 | 30399.2 |
| f0f1 atp synthase subunit c | E5284_RS22950 | Not Available | Positive | 4811346 - 4811585 | 8256.71 |
| f0f1 atp synthase subunit b | E5284_RS22955 | Not Available | Positive | 4811645 - 4812115 | 17264.9 |
| f0f1 atp synthase subunit delta | E5284_RS22960 | Not Available | Positive | 4812130 - 4812663 | 19383.3 |
| f0f1 atp synthase subunit alpha | E5284_RS22965 | Not Available | Positive | 4812676 - 4814217 | 55278.3 |
| f0f1 atp synthase subunit gamma | E5284_RS22970 | Not Available | Positive | 4814268 - 4815131 | 31587.3 |
| f0f1 atp synthase subunit beta | E5284_RS22975 | Not Available | Positive | 4815158 - 4816540 | 50266.4 |
| f0f1 atp synthase subunit epsilon | E5284_RS22980 | Not Available | Positive | 4816561 - 4816980 | 15086.3 |
Pathways
419 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

