Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetolactate synthase 2 catalytic subunit | E5284_RS22785 | Not Available | Negative | 4773813 - 4775459 | 59168.4 |
| ilv operon leader peptide | E5284_RS22790 | Not Available | Negative | 4775599 - 4775697 | 3231.32 |
| yifb family mg chelatase-like aaa atpase | E5284_RS22795 | Not Available | Positive | 4776051 - 4777571 | 55196.6 |
| macrodomain ori organization protein maop | E5284_RS22800 | Not Available | Negative | 4777597 - 4777935 | 13188.3 |
| hth-type transcriptional regulator hdfr | E5284_RS22805 | Not Available | Positive | 4778054 - 4778887 | 31545.6 |
| Trna-trp | Not Available | Not Available | Positive | 4778991 - 4779066 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 4779119 - 4779195 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 4779251 - 4779366 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 4779462 - 4782371 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 4782589 - 4782663 | Not Available |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

