Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-amino-4,6-dideoxy-d-galactose acyltransferase | E5284_RS22685 | Not Available | Negative | 4751598 - 4752275 | 24671.3 |
| glucose-1-phosphate thymidylyltransferase rfba | E5284_RS22690 | Not Available | Negative | 4752253 - 4753134 | 32792.4 |
| dtdp-glucose 4,6-dehydratase | E5284_RS22695 | Not Available | Negative | 4753153 - 4754220 | 39661.8 |
| udp-n-acetyl-d-mannosamine dehydrogenase | E5284_RS22700 | Not Available | Negative | 4754220 - 4755482 | 45655.1 |
| non-hydrolyzing udp-n-acetylglucosamine 2-epimerase | E5284_RS22705 | Not Available | Negative | 4755479 - 4756609 | 42090.6 |
| eca polysaccharide chain length modulation protein | E5284_RS22710 | Not Available | Negative | 4756665 - 4757711 | 39585.4 |
| udp-n-acetylglucosamine--undecaprenyl-phosphate n-acetylglucosaminephosphotransferase | E5284_RS22715 | Not Available | Negative | 4757723 - 4758826 | 41158.0 |
| transcription termination factor rho | E5284_RS22720 | Not Available | Negative | 4759062 - 4760321 | 46995.0 |
| rho operon leader peptide | E5284_RS22725 | Not Available | Negative | 4760400 - 4760528 | 4753.76 |
| thioredoxin trxa | E5284_RS22730 | Not Available | Negative | 4760661 - 4760990 | 11807.2 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

