Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl carrier protein | E5284_RS01105 | Not Available | Negative | 236231 - 236482 | 9527.52 |
| phosphopantetheine-binding protein | E5284_RS01110 | Not Available | Negative | 236495 - 236752 | 9272.0 |
| lysophospholipid acyltransferase family protein | E5284_RS01115 | Not Available | Negative | 236733 - 237560 | 30443.3 |
| beta-ketoacyl synthase chain length factor | E5284_RS01120 | Not Available | Negative | 237545 - 238267 | 26871.2 |
| class i sam-dependent methyltransferase | E5284_RS01125 | Not Available | Negative | 238308 - 239369 | 39662.5 |
| hypothetical protein | E5284_RS01130 | Not Available | Negative | 239438 - 239815 | 13744.4 |
| ai-2e family transporter | E5284_RS01135 | Not Available | Negative | 240231 - 241280 | 38452.5 |
| mfs transporter | E5284_RS01140 | Not Available | Positive | 241413 - 242630 | 42169.1 |
| dcrb family lipoprotein | E5284_RS01145 | Not Available | Negative | 242634 - 243191 | 19589.3 |
| 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter | E5284_RS01150 | Not Available | Negative | 243264 - 243929 | 25307.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

