Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-pro | Not Available | Not Available | Positive | 4743843 - 4743919 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 4743961 - 4744046 | Not Available |
| Trna-his | Not Available | Not Available | Positive | 4744067 - 4744142 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 4744199 - 4744275 | Not Available |
| bifunctional threonine/serine apc transporter thrp | E5284_RS22655 | Not Available | Negative | 4744378 - 4745763 | 50276.8 |
| lipopolysaccharide n-acetylmannosaminouronosyltransferase | E5284_RS22660 | Not Available | Negative | 4746043 - 4746783 | 27822.6 |
| eca oligosaccharide polymerase | E5284_RS22665 | Not Available | Negative | 4746786 - 4748138 | 51646.4 |
| tdp-n-acetylfucosamine:lipid ii n-acetylfucosaminyltransferase | E5284_RS22670 | Not Available | Negative | 4748135 - 4749214 | 40301.3 |
| lipid iii flippase wzxe | E5284_RS22675 | Not Available | Negative | 4749211 - 4750461 | 44805.9 |
| dtdp-4-amino-4,6-dideoxygalactose transaminase | E5284_RS22680 | Not Available | Negative | 4750463 - 4751593 | 41995.5 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

