Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine recombinase xerc | E5284_RS22585 | Not Available | Negative | 4732956 - 4733858 | 33663.5 |
| duf484 domain-containing protein | E5284_RS22590 | Not Available | Negative | 4733855 - 4734562 | 26896.8 |
| diaminopimelate epimerase | E5284_RS22595 | Not Available | Negative | 4734559 - 4735383 | 30285.4 |
| lps translocon maturation chaperone lptm | E5284_RS22600 | Not Available | Negative | 4735420 - 4735623 | 7148.51 |
| iron donor protein cyay | E5284_RS22605 | Not Available | Positive | 4735763 - 4736083 | 12233.1 |
| class i adenylate cyclase | E5284_RS22610 | Not Available | Negative | 4736179 - 4738725 | 97501.2 |
| hydroxymethylbilane synthase | E5284_RS22615 | Not Available | Positive | 4739120 - 4740061 | 33805.0 |
| uroporphyrinogen-iii synthase | E5284_RS22620 | Not Available | Positive | 4740058 - 4740798 | 27543.0 |
| uroporphyrinogen-iii c-methyltransferase | E5284_RS22625 | Not Available | Positive | 4740820 - 4742007 | 43164.4 |
| protoheme ix biogenesis protein hemy | E5284_RS22630 | Not Available | Positive | 4742010 - 4743209 | 45444.9 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

