Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine/homoserine lactone efflux protein | E5284_RS22540 | Not Available | Positive | 4722769 - 4723389 | 22243.8 |
| threonine export protein rhtc | E5284_RS22545 | Not Available | Negative | 4723435 - 4724055 | 22478.3 |
| atp-dependent dna helicase recq | E5284_RS22550 | Not Available | Negative | 4724118 - 4725947 | 68433.0 |
| phospholipase a | E5284_RS22555 | Not Available | Negative | 4726036 - 4726905 | 32972.7 |
| acyl-coa thioesterase yigi | E5284_RS22560 | Not Available | Positive | 4727071 - 4727538 | 17134.8 |
| eama family transporter rard | E5284_RS22565 | Not Available | Positive | 4727590 - 4728486 | 33290.1 |
| magnesium/cobalt transporter cora | E5284_RS22570 | Not Available | Negative | 4728604 - 4729554 | 36678.8 |
| ysgd/corl family protein | E5284_RS23360 | Not Available | Negative | 4729709 - 4729765 | 2152.61 |
| dna helicase ii | E5284_RS22575 | Not Available | Negative | 4730013 - 4732175 | 82104.9 |
| 5-amino-6-(5-phospho-d-ribitylamino)uracil phosphatase yigb | E5284_RS22580 | Not Available | Negative | 4732240 - 4732956 | 26745.1 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

