Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ubiquinone biosynthesis protein ubij | E5284_RS22485 | Not Available | Negative | 4711528 - 4712133 | 22161.8 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | E5284_RS22490 | Not Available | Negative | 4712147 - 4712902 | 28069.8 |
| dna recombination protein rmuc | E5284_RS22495 | Not Available | Negative | 4712997 - 4714427 | 54476.4 |
| uridine phosphorylase | E5284_RS22500 | Not Available | Negative | 4714569 - 4715330 | 27116.6 |
| dienelactone hydrolase family protein | E5284_RS22505 | Not Available | Positive | 4715596 - 4716405 | 29224.4 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferase | E5284_RS22510 | Not Available | Negative | 4716509 - 4718770 | 84324.5 |
| hth-type transcriptional regulator metr | E5284_RS22520 | Not Available | Positive | 4719006 - 4719944 | 35134.4 |
| carboxylate/amino acid/amine transporter | E5284_RS22525 | Not Available | Negative | 4719847 - 4720746 | 33445.6 |
| sugar/pyridoxal phosphate phosphatase yigl | E5284_RS22530 | Not Available | Negative | 4720827 - 4721627 | 29534.2 |
| lysophospholipase l2 | E5284_RS22535 | Not Available | Negative | 4721642 - 4722658 | 38975.3 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

