Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fatty acid oxidation complex subunit alpha fadb | E5284_RS22435 | Not Available | Positive | 4700909 - 4703098 | 79718.7 |
| acetyl-coa c-acyltransferase fada | E5284_RS22440 | Not Available | Positive | 4703108 - 4704271 | 40998.9 |
| nad(p)h-flavin reductase | E5284_RS22445 | Not Available | Negative | 4704455 - 4705156 | 26370.4 |
| 4-hydroxy-3-polyprenylbenzoate decarboxylase | E5284_RS22450 | Not Available | Negative | 4705197 - 4706690 | 55565.8 |
| transcription/translation regulatory transformer protein rfah | E5284_RS22455 | Not Available | Positive | 4706895 - 4707383 | 18253.2 |
| 3'-5' ssdna/rna exonuclease tatd | E5284_RS22460 | Not Available | Negative | 4707391 - 4708173 | 29346.9 |
| sec-independent protein translocase subunit tatc | E5284_RS22465 | Not Available | Negative | 4708215 - 4709003 | 29303.5 |
| sec-independent protein translocase protein tatb | E5284_RS22470 | Not Available | Negative | 4709006 - 4709554 | 19440.9 |
| sec-independent protein translocase subunit tata | E5284_RS22475 | Not Available | Negative | 4709558 - 4709812 | 9035.88 |
| ubiquinone biosynthesis regulatory protein kinase ubib | E5284_RS22480 | Not Available | Negative | 4709891 - 4711531 | 63391.4 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

