Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molybdopterin-guanine dinucleotide biosynthesis protein mobb | E5284_RS22385 | Not Available | Positive | 4690507 - 4691010 | 18322.3 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 4691149 - 4691264 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 4691360 - 4694269 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 4694476 - 4694551 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 4694661 - 4694737 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 4694808 - 4696349 | Not Available |
| menaquinone-dependent protoporphyrinogen ix dehydrogenase | E5284_RS22415 | Not Available | Negative | 4696727 - 4697272 | 20987.1 |
| trk system potassium transporter trkh | E5284_RS22420 | Not Available | Negative | 4697284 - 4698735 | 52744.6 |
| impact family protein | E5284_RS22425 | Not Available | Negative | 4698774 - 4699388 | 21784.1 |
| xaa-pro dipeptidase | E5284_RS22430 | Not Available | Negative | 4699388 - 4700719 | 50213.9 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

