Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxygen-independent coproporphyrinogen iii oxidase | E5284_RS22335 | Not Available | Negative | 4680179 - 4681552 | 52617.8 |
| der gtpase-activating protein yihi | E5284_RS22340 | Not Available | Negative | 4681741 - 4682256 | 19104.6 |
| hypothetical protein | E5284_RS22345 | Not Available | Negative | 4682367 - 4682591 | 8321.69 |
| ribosome biogenesis gtp-binding protein yiha/ysxc | E5284_RS22350 | Not Available | Positive | 4682819 - 4683451 | 23539.4 |
| dna polymerase i | E5284_RS22355 | Not Available | Negative | 4683785 - 4686571 | 103250.0 |
| acyltransferase | E5284_RS22360 | Not Available | Positive | 4686935 - 4687870 | 35824.7 |
| thiol:disulfide interchange protein dsba | E5284_RS22365 | Not Available | Negative | 4687884 - 4688507 | 22969.7 |
| serine/threonine protein kinase | E5284_RS22370 | Not Available | Negative | 4688524 - 4689510 | 38302.5 |
| yihd family protein | E5284_RS22375 | Not Available | Negative | 4689587 - 4689856 | 10291.5 |
| molybdenum cofactor guanylyltransferase moba | E5284_RS22380 | Not Available | Positive | 4689926 - 4690510 | 21598.1 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

