Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar kinase | E5284_RS22285 | Not Available | Positive | 4668498 - 4669394 | 31911.7 |
| deor/glpr family dna-binding transcription regulator | E5284_RS22290 | Not Available | Positive | 4669434 - 4670222 | 28924.8 |
| mfs transporter | E5284_RS22295 | Not Available | Negative | 4670287 - 4671552 | 46392.1 |
| sugar phosphate isomerase/epimerase family protein | E5284_RS22300 | Not Available | Negative | 4671652 - 4672635 | 37189.2 |
| gntr family transcriptional regulator | E5284_RS22305 | Not Available | Negative | 4672644 - 4673354 | 26808.9 |
| ribosome-dependent gtpase typa | E5284_RS22310 | Not Available | Negative | 4673592 - 4675415 | 67409.6 |
| glutamate--ammonia ligase | E5284_RS22315 | Not Available | Positive | 4675795 - 4677204 | 51979.8 |
| nitrogen regulation protein nr(ii) | E5284_RS22320 | Not Available | Positive | 4677399 - 4678448 | 38477.5 |
| nitrogen regulation protein nr(i) | E5284_RS22325 | Not Available | Positive | 4678460 - 4679869 | 52346.9 |
| yshb family small membrane protein | E5284_RS22330 | Not Available | Positive | 4679981 - 4680091 | 3630.44 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

