Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fatty acid biosynthesis protein faby | E5284_RS22235 | Not Available | Negative | 4658673 - 4659614 | 35186.2 |
| d-aminoacyl-trna deacylase | E5284_RS22240 | Not Available | Negative | 4659659 - 4660096 | 16031.1 |
| virulence factor brkb family protein | E5284_RS22245 | Not Available | Negative | 4660099 - 4660965 | 32468.3 |
| glucose-1-phosphatase | E5284_RS22250 | Not Available | Negative | 4660959 - 4661558 | 22664.8 |
| aldose 1-epimerase | E5284_RS22255 | Not Available | Negative | 4661634 - 4662527 | 33167.2 |
| mfs transporter | E5284_RS22260 | Not Available | Negative | 4662558 - 4663883 | 48257.9 |
| mfs transporter | E5284_RS22265 | Not Available | Negative | 4663975 - 4665408 | 50603.9 |
| zinc-dependent alcohol dehydrogenase | E5284_RS22270 | Not Available | Negative | 4665479 - 4666489 | 35990.8 |
| aldolase | E5284_RS22275 | Not Available | Negative | 4666522 - 4667409 | 31815.5 |
| sulfolactaldehyde 3-reductase | E5284_RS22280 | Not Available | Negative | 4667435 - 4668325 | 31100.0 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

