Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| azlc family abc transporter permease | E5284_RS22185 | Not Available | Positive | 4649572 - 4650231 | 22742.6 |
| azld domain-containing protein | E5284_RS22190 | Not Available | Positive | 4650231 - 4650554 | 11237.3 |
| ydgh/bhsa/mcba-like domain containing protein | E5284_RS22195 | Not Available | Negative | 4650597 - 4650809 | 7299.68 |
| crp/fnr family transcriptional regulator | E5284_RS22200 | Not Available | Positive | 4650939 - 4651460 | 20249.2 |
| ygjv family protein | E5284_RS22205 | Not Available | Positive | 4651516 - 4652025 | 18697.5 |
| formate dehydrogenase accessory sulfurtransferase fdhd | E5284_RS22210 | Not Available | Negative | 4651992 - 4652828 | 30372.6 |
| formate dehydrogenase-n subunit alpha | E5284_RS22215 | Not Available | Positive | 4653023 - 4656073 | 112058.0 |
| formate dehydrogenase o subunit beta | E5284_RS22220 | Not Available | Positive | 4656086 - 4656988 | 33008.1 |
| formate dehydrogenase cytochrome b556 subunit | E5284_RS22225 | Not Available | Positive | 4656985 - 4657620 | 24718.8 |
| formate dehydrogenase accessory protein fdhe | E5284_RS22230 | Not Available | Positive | 4657617 - 4658546 | 34729.5 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

