Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-hydroxy-fatty acyl-acp dehydratase | E5284_RS01055 | Not Available | Negative | 226635 - 227111 | 16754.1 |
| beta-ketoacyl-[acyl-carrier-protein] synthase family protein | E5284_RS01060 | Not Available | Negative | 227108 - 228277 | 40818.7 |
| duf3261 domain-containing protein | E5284_RS01065 | Not Available | Negative | 228279 - 228815 | 19630.7 |
| mmpl family transporter | E5284_RS01070 | Not Available | Negative | 228946 - 231267 | 83976.9 |
| lola family protein | E5284_RS01075 | Not Available | Negative | 231236 - 231841 | 23135.8 |
| acyl-coa thioesterase | E5284_RS01080 | Not Available | Negative | 231838 - 232260 | 16600.8 |
| glycosyltransferase family 2 protein | E5284_RS01085 | Not Available | Negative | 232263 - 233954 | 63615.5 |
| hydroxymyristoyl-acp dehydratase | E5284_RS01090 | Not Available | Negative | 233945 - 234298 | 13653.4 |
| amp-binding protein | E5284_RS01095 | Not Available | Negative | 234285 - 235646 | 51305.9 |
| hypothetical protein | E5284_RS01100 | Not Available | Negative | 235643 - 236224 | 21678.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

