Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| superoxide dismutase | E5284_RS22135 | Not Available | Negative | 4639482 - 4640102 | 22939.0 |
| l-rhamnose/proton symporter rhat | E5284_RS22140 | Not Available | Positive | 4640392 - 4641426 | 37147.9 |
| hth-type transcriptional activator rhar | E5284_RS22145 | Not Available | Negative | 4641423 - 4642274 | 32725.0 |
| hth-type transcriptional activator rhas | E5284_RS22150 | Not Available | Negative | 4642427 - 4643275 | 32473.6 |
| rhamnulokinase | E5284_RS22155 | Not Available | Positive | 4643579 - 4645048 | 53987.2 |
| l-rhamnose isomerase | E5284_RS22160 | Not Available | Positive | 4645045 - 4646304 | 47317.1 |
| rhamnulose-1-phosphate aldolase | E5284_RS22165 | Not Available | Positive | 4646449 - 4647276 | 30127.2 |
| lactaldehyde reductase | E5284_RS22170 | Not Available | Positive | 4647405 - 4648553 | 40277.5 |
| l-rhamnose mutarotase | E5284_RS22175 | Not Available | Positive | 4648550 - 4648864 | 12307.5 |
| helix-turn-helix domain-containing protein | E5284_RS22180 | Not Available | Negative | 4648922 - 4649470 | 19690.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

