Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease e activity regulator rraa | E5284_RS22035 | Not Available | Positive | 4619653 - 4620138 | 17409.4 |
| septal ring assembly protein zapb | E5284_RS22040 | Not Available | Negative | 4620356 - 4620601 | 9517.24 |
| mip/aquaporin family protein | E5284_RS22045 | Not Available | Positive | 4621030 - 4621875 | 29794.7 |
| glycerol kinase glpk | E5284_RS22050 | Not Available | Positive | 4621897 - 4623405 | 56072.7 |
| class ii fructose-bisphosphatase | E5284_RS22055 | Not Available | Positive | 4623583 - 4624593 | 35797.4 |
| ferredoxin--nadp(+) reductase | E5284_RS22060 | Not Available | Positive | 4624689 - 4625435 | 27518.2 |
| duf805 domain-containing protein | E5284_RS22065 | Not Available | Negative | 4625522 - 4625944 | 15779.0 |
| duf1454 family protein | E5284_RS22070 | Not Available | Positive | 4626170 - 4626769 | 21684.1 |
| triose-phosphate isomerase | E5284_RS22075 | Not Available | Positive | 4626878 - 4627645 | 26863.2 |
| dass family sodium-coupled anion symporter | E5284_RS22080 | Not Available | Negative | 4627687 - 4629159 | 52287.4 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

