Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| met regulon transcriptional regulator metj | E5284_RS21980 | Not Available | Positive | 4608643 - 4608960 | 12194.5 |
| mfs transporter | E5284_RS21985 | Not Available | Negative | 4609081 - 4610505 | 52168.5 |
| oligogalacturonate-specific porin kdgm family protein | E5284_RS21990 | Not Available | Negative | 4610595 - 4611275 | 26544.4 |
| 50s ribosomal protein l31 | E5284_RS21995 | Not Available | Negative | 4611612 - 4611827 | 7944.55 |
| primosomal protein n' | E5284_RS22000 | Not Available | Positive | 4612160 - 4614358 | 81687.3 |
| dna-binding transcriptional regulator cytr | E5284_RS22005 | Not Available | Positive | 4614515 - 4615540 | 37598.6 |
| cell division protein ftsn | E5284_RS22015 | Not Available | Positive | 4615634 - 4616599 | 35974.4 |
| atp-dependent protease subunit hslv | E5284_RS22020 | Not Available | Positive | 4616692 - 4617222 | 19028.9 |
| hslu--hslv peptidase atpase subunit | E5284_RS22025 | Not Available | Positive | 4617232 - 4618563 | 49648.9 |
| 1,4-dihydroxy-2-naphthoate polyprenyltransferase | E5284_RS22030 | Not Available | Positive | 4618631 - 4619560 | 33664.1 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

