Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (uridine(54)-c5)-methyltransferase trma | E5284_RS21875 | Not Available | Positive | 4583246 - 4584346 | 41916.0 |
| yijd family membrane protein | E5284_RS21880 | Not Available | Negative | 4584393 - 4584752 | 13010.2 |
| hth-type transcriptional repressor fabr | E5284_RS21885 | Not Available | Negative | 4584768 - 4585403 | 24060.9 |
| si-specific nad(p)(+) transhydrogenase | E5284_RS21890 | Not Available | Positive | 4585595 - 4586995 | 51557.4 |
| dna-binding transcriptional regulator oxyr | E5284_RS21895 | Not Available | Negative | 4586978 - 4587895 | 34207.8 |
| argininosuccinate lyase | E5284_RS21905 | Not Available | Negative | 4588188 - 4589561 | 50316.1 |
| acetylglutamate kinase | E5284_RS21910 | Not Available | Negative | 4589669 - 4590445 | 27093.2 |
| n-acetyl-gamma-glutamyl-phosphate reductase | E5284_RS21915 | Not Available | Negative | 4590453 - 4591457 | 35820.9 |
| acetylornithine deacetylase | E5284_RS21920 | Not Available | Positive | 4591613 - 4592764 | 42090.3 |
| phosphoenolpyruvate carboxylase | E5284_RS21925 | Not Available | Positive | 4593045 - 4595696 | 99098.4 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

