Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphomethylpyrimidine synthase thic | E5284_RS21725 | Not Available | Positive | 4550301 - 4552199 | 70645.0 |
| thiamine phosphate synthase | E5284_RS21730 | Not Available | Positive | 4552199 - 4552834 | 22964.6 |
| hesa/moeb/thif family protein | E5284_RS21735 | Not Available | Positive | 4552827 - 4553585 | 27323.1 |
| sulfur carrier protein this | E5284_RS21740 | Not Available | Positive | 4553566 - 4553766 | 7342.83 |
| thiazole synthase | E5284_RS21745 | Not Available | Positive | 4553768 - 4554538 | 26840.7 |
| 2-iminoacetate synthase thih | E5284_RS21750 | Not Available | Positive | 4554535 - 4555665 | 43093.3 |
| rna chaperone/antiterminator cspa | E5284_RS21755 | Not Available | Negative | 4555783 - 4555995 | 7642.99 |
| dna-directed rna polymerase subunit beta' | E5284_RS21760 | Not Available | Negative | 4556952 - 4561175 | 155244.0 |
| dna-directed rna polymerase subunit beta | E5284_RS21765 | Not Available | Negative | 4561252 - 4565280 | 150374.0 |
| 50s ribosomal protein l7/l12 | E5284_RS21770 | Not Available | Negative | 4565601 - 4565966 | 12327.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

