Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent response regulator transcription factor zrar | E5284_RS21675 | Not Available | Negative | 4541589 - 4542914 | 48451.6 |
| two-component system sensor histidine kinase zras | E5284_RS21680 | Not Available | Negative | 4542920 - 4544305 | 50862.0 |
| zinc resistance sensor/chaperone zrap | E5284_RS21685 | Not Available | Positive | 4544567 - 4545001 | 15573.6 |
| duf1481 domain-containing protein | E5284_RS21690 | Not Available | Negative | 4545091 - 4545786 | 26461.8 |
| nucleoid-associated protein hu-alpha | E5284_RS21695 | Not Available | Negative | 4545798 - 4546070 | 9521.44 |
| yjag family protein | E5284_RS21700 | Not Available | Negative | 4546257 - 4546847 | 22660.0 |
| deoxyribonuclease v | E5284_RS21705 | Not Available | Negative | 4546881 - 4547561 | 24845.1 |
| uroporphyrinogen decarboxylase | E5284_RS21710 | Not Available | Negative | 4547571 - 4548635 | 39281.6 |
| nad(+) diphosphatase | E5284_RS21715 | Not Available | Negative | 4548685 - 4549458 | 29547.5 |
| sigma d regulator | E5284_RS21720 | Not Available | Positive | 4549555 - 4550043 | 18589.4 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

