Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| universal stress protein uspa | E5284_RS01005 | Not Available | Negative | 217915 - 218352 | 16124.4 |
| universal stress protein uspb | E5284_RS01010 | Not Available | Positive | 218746 - 219081 | 12948.1 |
| inorganic phosphate transporter pita | E5284_RS01015 | Not Available | Negative | 219146 - 220645 | 53477.5 |
| nad(p)/fad-dependent oxidoreductase | E5284_RS01020 | Not Available | Positive | 220875 - 222071 | 43383.1 |
| nickel-responsive transcriptional regulator nikr | E5284_RS01025 | Not Available | Negative | 222147 - 222548 | 15127.7 |
| lysr family transcriptional regulator | E5284_RS01030 | Not Available | Negative | 222631 - 223491 | 32369.0 |
| phenolic acid decarboxylase | E5284_RS01035 | Not Available | Positive | 223591 - 224097 | 19179.5 |
| 4'-phosphopantetheinyl transferase acpt | E5284_RS01040 | Not Available | Negative | 224089 - 224679 | 21471.5 |
| beta-ketoacyl-acp synthase | E5284_RS01045 | Not Available | Negative | 224681 - 225910 | 44149.4 |
| 3-ketoacyl-acp reductase fabg2 | E5284_RS01050 | Not Available | Negative | 225907 - 226638 | 25735.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

