Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna repair transcriptional activator rtcr | E5284_RS21575 | Not Available | Positive | 4514741 - 4516321 | 59680.2 |
| duf3811 domain-containing protein | E5284_RS21580 | Not Available | Positive | 4516426 - 4516698 | 10557.8 |
| 23s rrna pseudouridine(2604) synthase rluf | E5284_RS21585 | Not Available | Negative | 4516695 - 4517570 | 32655.8 |
| ccdb family protein | E5284_RS21590 | Not Available | Negative | 4517821 - 4518138 | 11319.9 |
| type ii toxin-antitoxin system ccda family antitoxin | E5284_RS21595 | Not Available | Negative | 4518138 - 4518431 | 11485.0 |
| type ii toxin-antitoxin system rele/pare family toxin | E5284_RS21600 | Not Available | Positive | 4518627 - 4518941 | 11970.6 |
| addiction module antidote protein | E5284_RS21605 | Not Available | Positive | 4518934 - 4519212 | 9864.0 |
| dipeptidase pepe | E5284_RS21610 | Not Available | Positive | 4519324 - 4520013 | 24479.5 |
| na/pi cotransporter family protein | E5284_RS21615 | Not Available | Negative | 4520142 - 4521773 | 59640.8 |
| methionine synthase | E5284_RS21620 | Not Available | Negative | 4521926 - 4525609 | 136138.0 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

