Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-xylose transporter xyle | E5284_RS21525 | Not Available | Positive | 4502570 - 4504045 | 53539.9 |
| phosphate-starvation-inducible protein psie | E5284_RS21530 | Not Available | Negative | 4504090 - 4504500 | 15625.8 |
| yjbh domain-containing protein | E5284_RS21535 | Not Available | Negative | 4504676 - 4506772 | 78494.6 |
| capsule biosynthesis gfcc family protein | E5284_RS21540 | Not Available | Negative | 4506772 - 4507509 | 26556.8 |
| yjbf family lipoprotein | E5284_RS21545 | Not Available | Negative | 4507506 - 4508144 | 23764.5 |
| exopolysaccharide production protein yjbe | E5284_RS21550 | Not Available | Negative | 4508285 - 4508527 | 7357.48 |
| glucose-6-phosphate isomerase | E5284_RS21555 | Not Available | Negative | 4508998 - 4510644 | 61412.8 |
| lysine-sensitive aspartokinase 3 | E5284_RS21560 | Not Available | Positive | 4510928 - 4512277 | 48651.6 |
| nucleotidyltransferase domain-containing protein | E5284_RS21565 | Not Available | Negative | 4512370 - 4513155 | 30211.3 |
| slipin family protein | E5284_RS21570 | Not Available | Negative | 4513161 - 4514288 | 41899.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

