Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diacylglycerol kinase | E5284_RS21470 | Not Available | Negative | 4489920 - 4490288 | 13354.5 |
| glycerol-3-phosphate 1-o-acyltransferase plsb | E5284_RS21475 | Not Available | Positive | 4490459 - 4492879 | 91361.9 |
| 4-hydroxybenzoate octaprenyltransferase | E5284_RS21480 | Not Available | Negative | 4492933 - 4493805 | 32470.7 |
| chorismate lyase | E5284_RS21485 | Not Available | Negative | 4493819 - 4494316 | 18786.8 |
| maltose operon protein malm | E5284_RS21490 | Not Available | Negative | 4494497 - 4495447 | 32648.1 |
| maltoporin | E5284_RS21495 | Not Available | Negative | 4495561 - 4496919 | 50236.3 |
| maltose/maltodextrin abc transporter atp-binding protein malk | E5284_RS21500 | Not Available | Negative | 4496995 - 4498104 | 40801.8 |
| maltose/maltodextrin abc transporter substrate-binding protein male | E5284_RS21505 | Not Available | Positive | 4498476 - 4499666 | 43183.8 |
| maltose abc transporter permease malf | E5284_RS21510 | Not Available | Positive | 4499797 - 4501341 | 56969.8 |
| maltose abc transporter permease malg | E5284_RS21515 | Not Available | Positive | 4501356 - 4502246 | 32220.3 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

