Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine racemase | E5284_RS21420 | Not Available | Negative | 4480969 - 4482048 | 39013.9 |
| replicative dna helicase | E5284_RS21425 | Not Available | Negative | 4482080 - 4483495 | 52603.5 |
| quinone oxidoreductase | E5284_RS21430 | Not Available | Positive | 4483557 - 4484540 | 35052.0 |
| envelope stress response protein pspg | E5284_RS21435 | Not Available | Negative | 4484769 - 4485011 | 8967.88 |
| trna dihydrouridine(20/20a) synthase dusa | E5284_RS21440 | Not Available | Negative | 4485145 - 4486143 | 36850.3 |
| cupin domain-containing protein | E5284_RS21445 | Not Available | Negative | 4486235 - 4486723 | 18339.4 |
| zinc uptake transcriptional repressor zur | E5284_RS21450 | Not Available | Positive | 4486841 - 4487359 | 19433.5 |
| csbd family protein | E5284_RS21455 | Not Available | Negative | 4487404 - 4487613 | 8249.61 |
| mate family efflux transporter dinf | E5284_RS21460 | Not Available | Negative | 4487751 - 4489070 | 47640.9 |
| transcriptional repressor lexa | E5284_RS21465 | Not Available | Negative | 4489202 - 4489810 | 22380.2 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

