Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| redox-sensitive transcriptional activator soxr | E5284_RS21365 | Not Available | Negative | 4468423 - 4468881 | 16865.4 |
| superoxide response transcriptional regulator soxs | E5284_RS21370 | Not Available | Positive | 4468968 - 4469291 | 13004.7 |
| eal domain-containing protein | E5284_RS21375 | Not Available | Negative | 4469294 - 4470880 | 60271.6 |
| yjcb family protein | E5284_RS21380 | Not Available | Positive | 4471429 - 4471710 | 10243.9 |
| autotransporter outer membrane beta-barrel domain-containing protein | E5284_RS21385 | Not Available | Negative | 4471792 - 4474101 | 84455.8 |
| single-stranded dna-binding protein ssb1 | E5284_RS21390 | Not Available | Negative | 4474480 - 4475013 | 18775.9 |
| excinuclease abc subunit uvra | E5284_RS21400 | Not Available | Positive | 4475265 - 4478087 | 103885.0 |
| mmcq/yjbr family dna-binding protein | E5284_RS21405 | Not Available | Negative | 4478185 - 4478541 | 13567.1 |
| acid phosphatase apha | E5284_RS21410 | Not Available | Negative | 4478669 - 4479382 | 26355.2 |
| aromatic amino acid transaminase | E5284_RS21415 | Not Available | Negative | 4479644 - 4480837 | 43361.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

