Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf485 domain-containing protein | E5284_RS21315 | Not Available | Positive | 4457288 - 4457602 | 11659.4 |
| cation/acetate symporter actp | E5284_RS21320 | Not Available | Positive | 4457599 - 4459248 | 59074.4 |
| duf4431 domain-containing protein | E5284_RS21325 | Not Available | Negative | 4459296 - 4460249 | 35100.5 |
| gfo/idh/moca family protein | E5284_RS21330 | Not Available | Positive | 4460492 - 4461781 | 48713.5 |
| lrgb family protein | E5284_RS21335 | Not Available | Negative | 4461797 - 4462486 | 24826.3 |
| cida/lrga family protein | E5284_RS21340 | Not Available | Negative | 4462479 - 4462889 | 15411.8 |
| lysr family transcriptional regulator | E5284_RS21345 | Not Available | Positive | 4462991 - 4463881 | 33534.1 |
| rep-associated tyrosine transposase | E5284_RS21350 | Not Available | Negative | 4463955 - 4464446 | 19592.1 |
| na+/h+ antiporter | E5284_RS21355 | Not Available | Negative | 4464669 - 4466315 | 60267.1 |
| guanine/hypoxanthine transporter ghxp | E5284_RS21360 | Not Available | Negative | 4466474 - 4467823 | 45726.4 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

