Citrobacter freundii strain Upstream_1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain Upstream_1 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic characteristics. This strain is notable for its presence in diverse habitats, including hospital sewage, intestinal tracts, various sewage environments, soil, and surface waters. It possesses flagella, which facilitate motility, allowing it to thrive in these varied environments. This strain has been identified in multiple hosts, including Homo sapiens (humans), various Metazoa, Oryctolagus cuniculus (domestic rabbits), several fish species such as Tilapia and Cyprinus carpio, as well as mammals like Canis lupus familiaris (dogs) and Felis catus (cats). It is also found in amphibians and birds like Struthio camelus (ostrich). Citrobacter freundii strain Upstream_1 is recognized for its role as an opportunistic pathogen, which can lead to infections in both humans and animals. In humans, it is associated with urinary and respiratory tract infections, while in animals, it can cause respiratory tract infections and pleuritis in cats, as well as infections in horses and dogs. Given its wide distribution and association with various hosts, strain Upstream_1 underscores the significance of environmental reservoirs in the propagation of opportunistic infections. Its presence in hospital sewage highlights the potential for transmission in healthcare settings, emphasizing the need for monitoring and control measures to mitigate the risks posed by such opportunistic pathogens.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain Upstream_1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain Upstream_1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain Upstream_1 chromosome, complete

Gene Summary

Adenine Count

1142509 bp

Thymine Count

1145473 bp

Guanine Count

1275806 bp

Cytosine Count

1275705 bp

Genome Length

4839493 bp

Protein-coding Genes

4266 genes

Non-Coding Genes

304 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf485 domain-containing proteinE5284_RS21315Not AvailablePositive4457288 - 445760211659.4
cation/acetate symporter actpE5284_RS21320Not AvailablePositive4457599 - 445924859074.4
duf4431 domain-containing proteinE5284_RS21325Not AvailableNegative4459296 - 446024935100.5
gfo/idh/moca family proteinE5284_RS21330Not AvailablePositive4460492 - 446178148713.5
lrgb family proteinE5284_RS21335Not AvailableNegative4461797 - 446248624826.3
cida/lrga family proteinE5284_RS21340Not AvailableNegative4462479 - 446288915411.8
lysr family transcriptional regulatorE5284_RS21345Not AvailablePositive4462991 - 446388133534.1
rep-associated tyrosine transposaseE5284_RS21350Not AvailableNegative4463955 - 446444619592.1
na+/h+ antiporterE5284_RS21355Not AvailableNegative4464669 - 446631560267.1
guanine/hypoxanthine transporter ghxpE5284_RS21360Not AvailableNegative4466474 - 446782345726.4

Displaying genes 4221 – 4230 of 4570 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total