Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate dehydrogenase subunit alpha | E5284_RS21255 | Not Available | Positive | 4443379 - 4445526 | 78896.6 |
| sel1 family tpr-like repeat protein yjco | E5284_RS21260 | Not Available | Positive | 4445709 - 4446392 | 24921.2 |
| glutamate/aspartate:proton symporter gltp | E5284_RS21265 | Not Available | Negative | 4446474 - 4447784 | 46956.0 |
| heme lyase nrfefg subunit nrfg | E5284_RS21270 | Not Available | Negative | 4448129 - 4448746 | 23224.1 |
| hypothetical protein | E5284_RS21280 | Not Available | Negative | 4448743 - 4450972 | 81246.3 |
| cytochrome c nitrite reductase subunit nrfd | E5284_RS21285 | Not Available | Negative | 4450986 - 4451942 | 35135.6 |
| cytochrome c nitrite reductase fe-s protein | E5284_RS21290 | Not Available | Negative | 4451939 - 4452610 | 24523.6 |
| cytochrome c nitrite reductase pentaheme subunit | E5284_RS21295 | Not Available | Negative | 4452607 - 4453173 | 20913.8 |
| ammonia-forming nitrite reductase cytochrome c552 subunit | E5284_RS21300 | Not Available | Negative | 4453218 - 4454654 | 53642.6 |
| acetate--coa ligase | E5284_RS21310 | Not Available | Positive | 4455091 - 4457049 | 72064.3 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

