Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system rele family toxin | E5284_RS21200 | Not Available | Positive | 4432989 - 4433276 | 11174.6 |
| ddrrrql repeat protein yjdp | E5284_RS21205 | Not Available | Negative | 4433273 - 4433602 | 13511.3 |
| hybrid sensor histidine kinase/response regulator | E5284_RS21210 | Not Available | Negative | 4433671 - 4435935 | 82905.3 |
| sugar abc transporter atp-binding protein | E5284_RS21220 | Not Available | Positive | 4436050 - 4437573 | 55624.9 |
| abc transporter permease subunit | E5284_RS21225 | Not Available | Positive | 4437566 - 4438561 | 34517.5 |
| abc transporter substrate-binding protein | E5284_RS21230 | Not Available | Positive | 4438650 - 4439591 | 32860.7 |
| d-lyxose/d-mannose family sugar isomerase | E5284_RS21235 | Not Available | Positive | 4439712 - 4440395 | 25687.2 |
| ketose 1,6-bisphosphate aldolase | E5284_RS21240 | Not Available | Positive | 4440410 - 4441270 | 31279.3 |
| carbohydrate kinase family protein | E5284_RS21245 | Not Available | Positive | 4441267 - 4442271 | 36598.8 |
| response regulator | E5284_RS21250 | Not Available | Negative | 4442359 - 4443090 | 26658.7 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

