Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sty4199 family hepn domain-containing protein | E5284_RS00955 | Not Available | Positive | 203508 - 205097 | 60239.2 |
| alpha,alpha-trehalase | E5284_RS00960 | Not Available | Negative | 205128 - 206777 | 63429.6 |
| cytochrome-c peroxidase | E5284_RS00965 | Not Available | Positive | 207208 - 208602 | 51588.4 |
| glutathione-disulfide reductase | E5284_RS00970 | Not Available | Negative | 208703 - 210055 | 48829.5 |
| 23s rrna (adenine(2030)-n(6))-methyltransferase rlmj | E5284_RS00975 | Not Available | Negative | 210160 - 211002 | 32061.5 |
| oligopeptidase a | E5284_RS00980 | Not Available | Positive | 211217 - 213259 | 77227.2 |
| 16s rrna (guanine(1516)-n(2))-methyltransferase rsmj | E5284_RS00985 | Not Available | Positive | 213268 - 214017 | 26779.6 |
| nad(p)/fad-dependent oxidoreductase | E5284_RS00990 | Not Available | Negative | 214129 - 215328 | 43402.8 |
| rrf2 family transcriptional regulator | E5284_RS00995 | Not Available | Positive | 215559 - 216062 | 18845.7 |
| dipeptide/tripeptide permease dtpb | E5284_RS01000 | Not Available | Negative | 216150 - 217622 | 53635.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

