Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| melibiose:sodium transporter melb | E5284_RS21050 | Not Available | Negative | 4401271 - 4402701 | 52607.3 |
| alpha-galactosidase | E5284_RS21055 | Not Available | Negative | 4402793 - 4404148 | 50657.8 |
| transcriptional regulator melr | E5284_RS21060 | Not Available | Positive | 4404417 - 4405349 | 35805.1 |
| arginine decarboxylase | E5284_RS21065 | Not Available | Positive | 4405549 - 4407816 | 84281.4 |
| arac family transcriptional regulator | E5284_RS21070 | Not Available | Positive | 4408130 - 4408891 | 28776.1 |
| arginine/agmatine antiporter | E5284_RS21075 | Not Available | Positive | 4409019 - 4410356 | 46998.5 |
| phosphoethanolamine transferase epta | E5284_RS21080 | Not Available | Positive | 4410493 - 4412130 | 61144.9 |
| two-component system response regulator pmra | E5284_RS21085 | Not Available | Positive | 4412135 - 4412803 | 25031.2 |
| two-component system sensor histidine kinase pmrb | E5284_RS21090 | Not Available | Positive | 4412813 - 4413886 | 40411.2 |
| lpxt activity modulator pmrr | E5284_RS21095 | Not Available | Negative | 4413880 - 4413969 | 3376.15 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

