Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peroxidase family protein | E5284_RS21000 | Not Available | Negative | 4383467 - 4387237 | 132480.0 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 4388603 - 4388718 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 4388813 - 4391722 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 4391940 - 4392014 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 4392103 - 4393644 | Not Available |
| sensor histidine kinase | E5284_RS21025 | Not Available | Positive | 4394260 - 4395891 | 60478.0 |
| two-component system response regulator dcur | E5284_RS21030 | Not Available | Positive | 4395888 - 4396607 | 27591.9 |
| anaerobic c4-dicarboxylate transporter dcub | E5284_RS21035 | Not Available | Positive | 4397359 - 4398699 | 47874.2 |
| class i fumarate hydratase fuma | E5284_RS21040 | Not Available | Positive | 4398795 - 4400441 | 59925.3 |
| duf2238 domain-containing protein | E5284_RS21045 | Not Available | Positive | 4400602 - 4401234 | 23377.4 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

