Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| quaternary ammonium compound efflux smr transporter suge | E5284_RS20900 | Not Available | Negative | 4366341 - 4366658 | 10926.0 |
| helix-turn-helix domain-containing protein | E5284_RS20905 | Not Available | Positive | 4366918 - 4367517 | 22104.1 |
| lipoprotein toxin entericidin b | E5284_RS20910 | Not Available | Negative | 4367548 - 4367694 | 4753.78 |
| lipoprotein antitoxin entericidin a | E5284_RS20915 | Not Available | Negative | 4367802 - 4367936 | 4719.94 |
| elongation factor p | E5284_RS20920 | Not Available | Negative | 4367993 - 4368559 | 20502.3 |
| ef-p beta-lysylation protein epmb | E5284_RS20925 | Not Available | Positive | 4368600 - 4369628 | 38701.9 |
| yjej family protein | E5284_RS20930 | Not Available | Positive | 4369812 - 4370675 | 32781.8 |
| duf4156 domain-containing protein | E5284_RS20935 | Not Available | Negative | 4370764 - 4371117 | 12012.3 |
| chaperonin groel | E5284_RS20940 | Not Available | Negative | 4371304 - 4372950 | 57351.4 |
| co-chaperone groes | E5284_RS20945 | Not Available | Negative | 4372994 - 4373287 | 10318.5 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

