Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| small ribosomal subunit biogenesis gtpase rsga | E5284_RS20850 | Not Available | Positive | 4353870 - 4354922 | 39203.6 |
| archaetidylserine decarboxylase | E5284_RS20855 | Not Available | Positive | 4355015 - 4355983 | 35938.3 |
| miniconductance mechanosensitive channel mscm | E5284_RS20860 | Not Available | Positive | 4356001 - 4359315 | 123250.0 |
| glutamate/gamma-aminobutyrate family transporter yjem | E5284_RS20865 | Not Available | Negative | 4359397 - 4360899 | 54660.8 |
| elongation factor p--(r)-beta-lysine ligase | E5284_RS20870 | Not Available | Negative | 4361112 - 4362089 | 36891.9 |
| fumarate reductase (quinol) flavoprotein subunit | E5284_RS20875 | Not Available | Positive | 4362414 - 4364204 | 65507.1 |
| fumarate reductase iron-sulfur protein | E5284_RS20880 | Not Available | Positive | 4364197 - 4364931 | 27158.5 |
| fumarate reductase subunit frdc | E5284_RS20885 | Not Available | Positive | 4364942 - 4365337 | 14880.8 |
| fumarate reductase subunit frdd | E5284_RS20890 | Not Available | Positive | 4365348 - 4365704 | 13046.6 |
| lipocalin family protein | E5284_RS20895 | Not Available | Positive | 4365811 - 4366344 | 19873.9 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

