Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yjfi family protein | E5284_RS20745 | Not Available | Negative | 4334686 - 4335090 | 15200.4 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | E5284_RS20750 | Not Available | Negative | 4335213 - 4335944 | 26540.3 |
| ribonuclease r | E5284_RS20755 | Not Available | Negative | 4336018 - 4338480 | 92997.5 |
| nitric oxide-sensing transcriptional repressor nsrr | E5284_RS20760 | Not Available | Negative | 4338519 - 4338944 | 15579.1 |
| adenylosuccinate synthase | E5284_RS20770 | Not Available | Negative | 4339161 - 4340459 | 47269.8 |
| duf2065 domain-containing protein | E5284_RS20775 | Not Available | Negative | 4340562 - 4340759 | 6992.11 |
| protease modulator hflc | E5284_RS20780 | Not Available | Negative | 4340842 - 4341846 | 37496.8 |
| ftsh protease activity modulator hflk | E5284_RS20785 | Not Available | Negative | 4341849 - 4343105 | 45491.5 |
| ribosome rescue gtpase hflx | E5284_RS20790 | Not Available | Negative | 4343295 - 4344575 | 48281.9 |
| rna chaperone hfq | E5284_RS20795 | Not Available | Negative | 4344650 - 4344961 | 11197.1 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

