Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator ular | E5284_RS20695 | Not Available | Positive | 4326790 - 4327545 | 27574.5 |
| esterase | E5284_RS20700 | Not Available | Negative | 4327542 - 4328291 | 27781.5 |
| biofilm peroxide resistance protein bsma | E5284_RS20705 | Not Available | Positive | 4328474 - 4328803 | 12083.8 |
| duf1471 family protease activator yjfn | E5284_RS20710 | Not Available | Positive | 4328951 - 4329226 | 9906.66 |
| isovaleryl-coa dehydrogenase | E5284_RS20715 | Not Available | Negative | 4329311 - 4330933 | 60525.3 |
| glutathionylspermidine synthase family protein | E5284_RS20720 | Not Available | Negative | 4331018 - 4332184 | 45369.4 |
| duf1190 domain-containing protein | E5284_RS20725 | Not Available | Negative | 4332187 - 4332828 | 23254.9 |
| duf350 domain-containing protein | E5284_RS20730 | Not Available | Negative | 4332838 - 4333236 | 14190.6 |
| yjfk family protein | E5284_RS20735 | Not Available | Negative | 4333254 - 4333913 | 24858.2 |
| pspa/im30 family protein | E5284_RS20740 | Not Available | Negative | 4333972 - 4334670 | 25356.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

