Citrobacter freundii strain Upstream_1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain Upstream_1 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic characteristics. This strain is notable for its presence in diverse habitats, including hospital sewage, intestinal tracts, various sewage environments, soil, and surface waters. It possesses flagella, which facilitate motility, allowing it to thrive in these varied environments. This strain has been identified in multiple hosts, including Homo sapiens (humans), various Metazoa, Oryctolagus cuniculus (domestic rabbits), several fish species such as Tilapia and Cyprinus carpio, as well as mammals like Canis lupus familiaris (dogs) and Felis catus (cats). It is also found in amphibians and birds like Struthio camelus (ostrich). Citrobacter freundii strain Upstream_1 is recognized for its role as an opportunistic pathogen, which can lead to infections in both humans and animals. In humans, it is associated with urinary and respiratory tract infections, while in animals, it can cause respiratory tract infections and pleuritis in cats, as well as infections in horses and dogs. Given its wide distribution and association with various hosts, strain Upstream_1 underscores the significance of environmental reservoirs in the propagation of opportunistic infections. Its presence in hospital sewage highlights the potential for transmission in healthcare settings, emphasizing the need for monitoring and control measures to mitigate the risks posed by such opportunistic pathogens.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain Upstream_1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain Upstream_1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain Upstream_1 chromosome, complete

Gene Summary

Adenine Count

1142509 bp

Thymine Count

1145473 bp

Guanine Count

1275806 bp

Cytosine Count

1275705 bp

Genome Length

4839493 bp

Protein-coding Genes

4266 genes

Non-Coding Genes

304 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methyl-accepting chemotaxis proteinE5284_RS20600Not AvailableNegative4310861 - 431243256122.7
iron-sulfur cluster repair protein ytfeE5284_RS20605Not AvailablePositive4312678 - 431334024834.0
d-serine/d-alanine/glycine transporterE5284_RS20610Not AvailableNegative4313404 - 431481351528.5
fkbp-type peptidyl-prolyl cis-trans isomeraseE5284_RS20615Not AvailableNegative4315123 - 431574322235.4
oapa family proteinE5284_RS20620Not AvailablePositive4315963 - 431661323658.0
dmt family transporterE5284_RS20625Not AvailableNegative4316702 - 431762833402.5
50s ribosomal protein l9E5284_RS20630Not AvailableNegative4317771 - 431822015774.9
30s ribosomal protein s18E5284_RS20635Not AvailableNegative4318260 - 43184878990.0
primosomal replication protein nE5284_RS20640Not AvailableNegative4318492 - 431880611387.8
30s ribosomal protein s6E5284_RS20645Not AvailableNegative4318813 - 431920815155.8

Displaying genes 4081 – 4090 of 4570 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total