Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyl-accepting chemotaxis protein | E5284_RS20600 | Not Available | Negative | 4310861 - 4312432 | 56122.7 |
| iron-sulfur cluster repair protein ytfe | E5284_RS20605 | Not Available | Positive | 4312678 - 4313340 | 24834.0 |
| d-serine/d-alanine/glycine transporter | E5284_RS20610 | Not Available | Negative | 4313404 - 4314813 | 51528.5 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | E5284_RS20615 | Not Available | Negative | 4315123 - 4315743 | 22235.4 |
| oapa family protein | E5284_RS20620 | Not Available | Positive | 4315963 - 4316613 | 23658.0 |
| dmt family transporter | E5284_RS20625 | Not Available | Negative | 4316702 - 4317628 | 33402.5 |
| 50s ribosomal protein l9 | E5284_RS20630 | Not Available | Negative | 4317771 - 4318220 | 15774.9 |
| 30s ribosomal protein s18 | E5284_RS20635 | Not Available | Negative | 4318260 - 4318487 | 8990.0 |
| primosomal replication protein n | E5284_RS20640 | Not Available | Negative | 4318492 - 4318806 | 11387.8 |
| 30s ribosomal protein s6 | E5284_RS20645 | Not Available | Negative | 4318813 - 4319208 | 15155.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

