Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,4-beta-xylanase | E5284_RS20545 | Not Available | Positive | 4300830 - 4301900 | 40894.2 |
| hemolysin family protein | E5284_RS20550 | Not Available | Positive | 4302067 - 4303404 | 49635.6 |
| duf1107 domain-containing protein | E5284_RS20555 | Not Available | Negative | 4303489 - 4303695 | 8088.21 |
| ytfj family protein | E5284_RS20565 | Not Available | Positive | 4304022 - 4304579 | 20555.8 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | E5284_RS20570 | Not Available | Negative | 4304569 - 4305309 | 27191.4 |
| 2',3'-cyclic-nucleotide 2'-phosphodiesterase | E5284_RS20575 | Not Available | Positive | 4305499 - 4307442 | 70791.8 |
| winged helix-turn-helix transcriptional regulator | E5284_RS20580 | Not Available | Negative | 4307538 - 4307912 | 13855.7 |
| sdr family oxidoreductase | E5284_RS20585 | Not Available | Positive | 4308001 - 4308849 | 29379.8 |
| arac family transcriptional regulator | E5284_RS20590 | Not Available | Positive | 4308931 - 4309755 | 31899.9 |
| dmt family transporter | E5284_RS20595 | Not Available | Positive | 4309831 - 4310796 | 34982.2 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

